GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_9345A3271 Traes_1BL_9345A3271	ta_iwgsc_1bl_v1_3909424	328	4136	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_9345A3271.10 Traes_1BL_9345A3271.10 PAC:31895141	High	No	1299		Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -25.558 AMFE: -0.637 GC content %: 40.108
Taestivum_Traes_1BL_9345A3271.11 Traes_1BL_9345A3271.11 PAC:31895142	High	No	933		Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -22.101 AMFE: -0.610 GC content %: 36.227

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).