Gene
Taestivum Traes 2AL DAA33562C
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2AL_DAA33562C Traes_2AL_DAA33562C |
ta_iwgsc_2al_v1_6327277 | 568 | 3847 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2AL_DAA33562C.1 Traes_2AL_DAA33562C.1 PAC:31941311 |
High | No | 450 | Get ORF Coding potential... Type: noncoding Potential: -0.433 Folding energies... MFEI: -27.644 AMFE: -0.443 GC content %: 62.444 | |
| Taestivum_Traes_2AL_DAA33562C.3 Traes_2AL_DAA33562C.3 PAC:31941313 |
High | No | 1693 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -30.461 AMFE: -0.589 GC content %: 51.742 | |
| Taestivum_Traes_2AL_DAA33562C.4 Traes_2AL_DAA33562C.4 PAC:31941314 |
High | No | 1701 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -30.335 AMFE: -0.587 GC content %: 51.675 | |
| Taestivum_Traes_2AL_DAA33562C.5 Traes_2AL_DAA33562C.5 PAC:31941315 |
High | No | 1623 | Get ORF Coding potential... Type: noncoding Potential: -0.519 Folding energies... MFEI: -29.772 AMFE: -0.568 GC content %: 52.372 | |
| Taestivum_Traes_2AL_DAA33562C.6 Traes_2AL_DAA33562C.6 PAC:31941316 |
High | No | 1592 | Get ORF Coding potential... Type: noncoding Potential: -0.516 Folding energies... MFEI: -29.497 AMFE: -0.563 GC content %: 52.387 | |
| Taestivum_Traes_2AL_DAA33562C.7 Traes_2AL_DAA33562C.7 PAC:31941318 |
High | No | 1068 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -31.957 AMFE: -0.614 GC content %: 52.060 | |
| Taestivum_Traes_2AL_DAA33562C.8 Traes_2AL_DAA33562C.8 PAC:31941317 |
High | No | 1056 | Get ORF Coding potential... Type: noncoding Potential: -0.394 Folding energies... MFEI: -31.989 AMFE: -0.613 GC content %: 52.178 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
