Gene
Taestivum Traes 3B 6FBC4039B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_6FBC4039B Traes_3B_6FBC4039B |
ta_iwgsc_3b_v1_10650467 | 1048 | 3002 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_6FBC4039B.1 Traes_3B_6FBC4039B.1 PAC:31877484 |
Low | No | 1863 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -33.468 AMFE: -0.681 GC content %: 49.168 | |
| Taestivum_Traes_3B_6FBC4039B.2 Traes_3B_6FBC4039B.2 PAC:31877481 |
High | No | 1690 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -34.083 AMFE: -0.679 GC content %: 50.178 | |
| Taestivum_Traes_3B_6FBC4039B.3 Traes_3B_6FBC4039B.3 PAC:31877482 |
High | No | 1795 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -33.226 AMFE: -0.680 GC content %: 48.858 | |
| Taestivum_Traes_3B_6FBC4039B.4 Traes_3B_6FBC4039B.4 PAC:31877483 |
High | No | 1829 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -33.548 AMFE: -0.684 GC content %: 49.043 | |
| Taestivum_Traes_3B_6FBC4039B.5 Traes_3B_6FBC4039B.5 PAC:31877485 |
Low | No | 1627 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -34.384 AMFE: -0.679 GC content %: 50.645 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
