Gene

Taestivum Traes 3DS 9CE5179F1

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_3DS_9CE5179F1
Traes_3DS_9CE5179F1
ta_iwgsc_3ds_v1_670231 100 3002 Phytozome v2.2 Triticum_aestivum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_3DS_9CE5179F1.1
Traes_3DS_9CE5179F1.1
PAC:31957709
High No 1930
Coding potential...
Type: noncoding Potential: -0.786
Folding energies...
MFEI: -28.829 AMFE: -0.712
GC content
%: 40.466
Taestivum_Traes_3DS_9CE5179F1.2
Traes_3DS_9CE5179F1.2
PAC:31957710
High No 1904
Coding potential...
Type: noncoding Potential: -0.784
Folding energies...
MFEI: -28.976 AMFE: -0.715
GC content
%: 40.546


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_3DS_9CE5179F1.png