GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_F10FE420F Traes_4AL_F10FE420F	ta_iwgsc_4al_v2_4186793	2	1509	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_F10FE420F.1 Traes_4AL_F10FE420F.1 PAC:31941158	High	No	1039		Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -30.674 AMFE: -0.550 GC content %: 55.727
Taestivum_Traes_4AL_F10FE420F.2 Traes_4AL_F10FE420F.2 PAC:31941156	High	No	1441		Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -27.835 AMFE: -0.572 GC content %: 48.647
Taestivum_Traes_4AL_F10FE420F.3 Traes_4AL_F10FE420F.3 PAC:31941159	High	No	1108		Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -30.641 AMFE: -0.559 GC content %: 54.783
Taestivum_Traes_4AL_F10FE420F.4 Traes_4AL_F10FE420F.4 PAC:31941157	High	No	1494		Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -27.845 AMFE: -0.573 GC content %: 48.594

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).