GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5AL_88E0C6B64 Traes_5AL_88E0C6B64	ta_iwgsc_5al_v1_2750767	1	1988	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5AL_88E0C6B64.1 Traes_5AL_88E0C6B64.1 PAC:31853151	High	No	1603		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -25.115 AMFE: -0.590 GC content %: 42.545
Taestivum_Traes_5AL_88E0C6B64.2 Traes_5AL_88E0C6B64.2 PAC:31853150	High	No	1600		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -25.006 AMFE: -0.588 GC content %: 42.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).