GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BL_5995A6BDE Traes_7BL_5995A6BDE	ta_iwgsc_7bl_v1_6743420	1	535	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BL_5995A6BDE.1 Traes_7BL_5995A6BDE.1 PAC:31967369	Low	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.624 Folding energies... MFEI: -32.460 AMFE: -0.573 GC content %: 56.684
Taestivum_Traes_7BL_5995A6BDE.2 Traes_7BL_5995A6BDE.2 PAC:31967368	Low	No	385		Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -35.532 AMFE: -0.633 GC content %: 56.104

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).