Gene

Zmays AC177820.3 FG007

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Zmays_AC177820.3_FG007
AC177820.3_FG007
1 26064887 26065848 Phytozome 6a Zea_mays
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Zmays_AC177820.3_FGT007
AC177820.3_FGT007
PAC:31012093
Low No 327
Coding potential...
Type: noncoding Potential: -0.752
Folding energies...
MFEI: -26.239 AMFE: -0.588
GC content
%: 44.648


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Zmays_AC177820.3_FGT007  SwissProt 2015-06-01 Q75EW9 1.0e-4


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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