Gene

Zmays GRMZM2G046442

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Zmays_GRMZM2G046442
GRMZM2G046442
6 83592391 83593543 Phytozome 6a Zea_mays
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Zmays_GRMZM2G046442_T01
GRMZM2G046442_T01
PAC:31021936
Low Yes 374
Coding potential...
Type: noncoding Potential: -1.041
Folding energies...
MFEI: -34.519 AMFE: -0.579
GC content
%: 59.626


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Zmays_GRMZM2G046442_T01  RepBase (RepeatMasker) 2014-01-31 Gypsy-191_ZM-LTR


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

GRMZM2G046442.png