Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G091320 GRMZM2G091320 |
1 | 229770648 | 229774379 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G091320_T01 GRMZM2G091320_T01 PAC:31007095 |
Low | Yes | 3207 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -31.691 AMFE: -0.756 GC content %: 41.940 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G091320_T01 | Rfam | 11.0 | mir-2973 | 6.6e-6 |
Zmays_GRMZM2G091320_T01 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_SB |