Aalpina AALP AA1G171000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AA1G171000 [ AALP_AA1G171000] |
1 | 10805682 | 10806906 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK43774 KFK43774 |
High | No | 277 | OG0092939 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -25.596 AMFE: -0.576 GC content %: 44.404 | |
| Aalpina_KFK43775 KFK43775 |
High | No | 240 | OG0092940 | Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -30.125 AMFE: -0.640 GC content %: 47.083 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
