Aalpina AALP AA1G202800

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Aalpina_AALP_AA1G202800
[ AALP_AA1G202800]
1 13723161 13724405 v4 Arabis alpina (Ensembl Plants 51)
Coding?
Yes


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Aalpina_KFK44009
KFK44009
High No 580 OG0092958
Coding potential...
Type: noncoding Potential: -0.766
Folding energies...
MFEI: -25.534 AMFE: -0.636
GC content
%: 40.172


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Aalpina_AALP_AA1G202800.png