Aalpina AALP AA2G204300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AA2G204300 [ AALP_AA2G204300] |
2 | 24958574 | 24959971 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK42042 KFK42042 |
High | No | 370 | OG0092859 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -23.081 AMFE: -0.606 GC content %: 38.108 | |
| Aalpina_KFK42043 KFK42043 |
High | No | 430 | OG0092860 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -23.651 AMFE: -0.648 GC content %: 36.512 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
