Aalpina AALP AA2G252600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AA2G252600 [ AALP_AA2G252600] |
2 | 27853885 | 27854562 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK42408 KFK42408 |
High | No | 329 | OG0016998 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -23.678 AMFE: -0.560 GC content %: 42.249 | |
| Aalpina_KFK42409 KFK42409 |
High | No | 370 | OG0016998 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -26.162 AMFE: -0.605 GC content %: 43.243 | |
| Aalpina_KFK42410 KFK42410 |
High | No | 338 | OG0016998 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -24.763 AMFE: -0.581 GC content %: 42.604 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
