Aalpina AALP AA3G003600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AA3G003600 [ AALP_AA3G003600] |
3 | 173979 | 174813 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK37594 KFK37594 |
High | No | 595 | OG0092572 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -25.731 AMFE: -0.680 GC content %: 37.815 | |
| Aalpina_KFK37595 KFK37595 |
High | No | 291 | OG0092573 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -25.636 AMFE: -0.561 GC content %: 45.704 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
