Aalpina AALP AA3G072300

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Aalpina_AALP_AA3G072300
[ AALP_AA3G072300]
3 3616700 3618014 v4 Arabis alpina (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Aalpina_KFK38120
KFK38120
Low No 669 OG0092602
Coding potential...
Type: noncoding Potential: -0.214
Folding energies...
MFEI: -26.697 AMFE: -0.640
GC content
%: 41.704


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Aalpina_KFK38120  SwissProt 2021-04-01 Q9CR41 8.99e-9


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Aalpina_AALP_AA3G072300.png