GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Aalpina_AALP_AA3G324900 [ AALP_AA3G324900]	3	24185050	24187493	v4	Arabis alpina (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Aalpina_KFK40056 KFK40056	High	No	345	OG0016997		Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -23.362 AMFE: -0.548 GC content %: 42.609
Aalpina_KFK40057 KFK40057	High	No	430	OG0016997		Get ORF Coding potential... Type: noncoding Potential: -0.241 Folding energies... MFEI: -22.535 AMFE: -0.554 GC content %: 40.698
Aalpina_KFK40058 KFK40058	High	No	343	OG0016997		Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -19.942 AMFE: -0.510 GC content %: 39.067

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).