Aalpina AALP AA4G000800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Aalpina_AALP_AA4G000800
[ AALP_AA4G000800]
4 75663 76345 v4 Arabis alpina (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Aalpina_KFK35513
KFK35513
Low No 482 OG0027211
Coding potential...
Type: noncoding Potential: -0.728
Folding energies...
MFEI: -27.282 AMFE: -0.620
GC content
%: 43.983
Aalpina_KFK35515
KFK35515
Low No 488 OG0027211
Coding potential...
Type: noncoding Potential: -1.081
Folding energies...
MFEI: -27.377 AMFE: -0.639
GC content
%: 42.828


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Aalpina_KFK35513  SwissProt 2021-04-01 Q9QYI7 1.13e-10
Aalpina_KFK35515  SwissProt 2021-04-01 Q9QYI7 2.49e-10


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Aalpina_AALP_AA4G000800.png