Aalpina AALP AA4G080300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AA4G080300 [ AALP_AA4G080300] |
4 | 7093315 | 7094521 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK36117 KFK36117 |
High | No | 1207 | OG0027214 | Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -25.915 AMFE: -0.598 GC content %: 43.331 | |
| Aalpina_KFK36118 KFK36118 |
High | No | 1044 | OG0027214 | Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -26.197 AMFE: -0.601 GC content %: 43.582 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
