Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Aalpina_AALP_AA6G026400 [ AALP_AA6G026400] |
6 | 1611523 | 1611897 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Aalpina_KFK30791 KFK30791 |
Low | Yes | 375 | OG0092139 | Get ORF Coding potential... Type: coding Potential: 0.109 Folding energies... MFEI: -26.053 AMFE: -0.622 GC content %: 41.867 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Aalpina_KFK30791 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/Maverick; LTR/Copia | |
Aalpina_KFK30791 | Rfam | 14.6 | MIR169_2 | 9.5e-4 |