Aalpina AALP AA8G075700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AA8G075700 [ AALP_AA8G075700] |
8 | 4664605 | 4665536 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK25170 KFK25170 |
High | No | 345 | OG0027186 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -25.275 AMFE: -0.589 GC content %: 42.899 | |
| Aalpina_KFK25171 KFK25171 |
High | No | 341 | OG0027186 | Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -26.070 AMFE: -0.593 GC content %: 43.988 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
