Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Aalpina_AALP_AAs40564U000100 [ AALP_AAs40564U000100] |
KL983390 | 1 | 871 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Aalpina_KFK23004 KFK23004 |
Low | No | 281 | OG0091492 | Get ORF Coding potential... Type: noncoding Potential: -0.444 Folding energies... MFEI: -32.598 AMFE: -0.573 GC content %: 56.940 | |
Aalpina_KFK23005 KFK23005 |
Low | No | 346 | OG0091493 | Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -42.081 AMFE: -0.687 GC content %: 61.272 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Aalpina_KFK23004 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; Simple_repeat | |
Aalpina_KFK23005 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; Simple_repeat |