Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Aalpina_AALP_AAs42412U000100 [ AALP_AAs42412U000100] |
KL974867 | 153 | 653 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Aalpina_KFK23827 KFK23827 |
Low | No | 235 | OG0027180 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -22.809 AMFE: -0.570 GC content %: 40.000 | |
Aalpina_KFK23828 KFK23828 |
Low | No | 252 | OG0027180 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -20.913 AMFE: -0.517 GC content %: 40.476 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Aalpina_KFK23827 | SwissProt | 2021-04-01 | A5HEI1 | 4.0e-10 |
Aalpina_KFK23828 | SwissProt | 2021-04-01 | A5HEI1 | 5.08e-10 |