Aalpina AALP AAs47034U000100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AAs47034U000100 [ AALP_AAs47034U000100] |
KL994829 | 314 | 1230 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK21884 KFK21884 |
High | No | 670 | OG0027158 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -22.761 AMFE: -0.573 GC content %: 39.701 | |
| Aalpina_KFK21885 KFK21885 |
High | No | 584 | OG0027158 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -21.661 AMFE: -0.527 GC content %: 41.096 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
