Aalpina AALP AAs48356U000200

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Aalpina_AALP_AAs48356U000200
[ AALP_AAs48356U000200]
KL977352 42131 42350 v4 Arabis alpina (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Aalpina_KFK23601
KFK23601
Low No 220 OG0091583
Coding potential...
Type: noncoding Potential: -1.463
Folding energies...
MFEI: -37.182 AMFE: -0.649
GC content
%: 57.273


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Aalpina_KFK23601  RepBase (RepeatMasker) 2014-01-31 rRNA


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Aalpina_AALP_AAs48356U000200.png