Aalpina AALP AAs56237U000100

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Aalpina_AALP_AAs56237U000100
[ AALP_AAs56237U000100]
KL970353 1 591 v4 Arabis alpina (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Aalpina_KFK24300
KFK24300
Low No 247 OG0091700
Coding potential...
Type: noncoding Potential: -0.989
Folding energies...
MFEI: -23.401 AMFE: -0.540
GC content
%: 43.320


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Aalpina_KFK24300  SwissProt 2021-04-01 Q8L3X9 1.2e-9


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Aalpina_AALP_AAs56237U000100.png