Aalpina AALP AAs70921U000100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Aalpina_AALP_AAs70921U000100 [ AALP_AAs70921U000100] |
KL979278 | 55050 | 55784 | v4 | Arabis alpina (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Aalpina_KFK23409 KFK23409 |
Low | No | 283 | OG0091553 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -26.254 AMFE: -0.590 GC content %: 44.523 | |
| Aalpina_KFK23410 KFK23410 |
Low | No | 273 | OG0016995 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -25.641 AMFE: -0.588 GC content %: 43.590 | |
| Aalpina_KFK23411 KFK23411 |
Low | No | 234 | OG0016995 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -27.692 AMFE: -0.642 GC content %: 43.162 | |
| Aalpina_KFK23412 KFK23412 |
Low | No | 396 | OG0016995 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -26.237 AMFE: -0.608 GC content %: 43.182 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Aalpina_KFK23411 | SwissProt | 2021-04-01 | Q39571 | 3.02e-16 |
| Aalpina_KFK23412 | SwissProt | 2021-04-01 | Q05737 | 1.35e-7 |
| Aalpina_KFK23409 | SwissProt | 2021-04-01 | Q39571 | 1.83e-16 |
| Aalpina_KFK23410 | SwissProt | 2021-04-01 | Q5RE13 | 1.84e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
