Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Achinensis_CEY00_Acc08378 [ CEY00_Acc08378] |
LG8 | 936457 | 942253 | Red5_PS1_1.69.0 | Actinidia chinensis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Achinensis_PSS23555 PSS23555 |
Low | No | 2600 | OG0067279 | Get ORF Coding potential... Type: noncoding Potential: -0.002 Folding energies... MFEI: -24.269 AMFE: -0.666 GC content %: 36.462 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Achinensis_PSS23555 | SwissProt | 2021-04-01 | Q9FM54 | 2.06e-29 |
Achinensis_PSS23555 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger; LTR/Gypsy |