Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Achinensis_CEY00_Acc18501 [ CEY00_Acc18501] |
LG16 | 11978385 | 11982874 | Red5_PS1_1.69.0 | Actinidia chinensis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Achinensis_PSS08132 PSS08132 |
Low | Yes | 3496 | OG0067041 | Get ORF Coding potential... Type: noncoding Potential: -0.048 Folding energies... MFEI: -26.201 AMFE: -0.718 GC content %: 36.470 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Achinensis_PSS08132 | Rfam | 14.6 | MIR2118 | 3.1e-5 |
Achinensis_PSS08132 | SwissProt | 2021-04-01 | Q9M350 | 1.36e-5 |