GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe0009s0002 [ Aqcoe0009s0002]	scaffold_9	9152	13448	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe0009s0002.1 Aqcoe0009s0002.1	High	No	1444	OG0002980		Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -24.848 AMFE: -0.680 GC content %: 36.565
Acoerulea_Aqcoe0009s0002.2 Aqcoe0009s0002.2	High	No	865	OG0002980		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -26.590 AMFE: -0.676 GC content %: 39.306
Acoerulea_Aqcoe0009s0002.3 Aqcoe0009s0002.3	High	No	1018	OG0002980		Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -25.933 AMFE: -0.675 GC content %: 38.409

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).