GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe0009s0018 [ Aqcoe0009s0018]	scaffold_9	128525	129547	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe0009s0018.1 Aqcoe0009s0018.1	High	No	667	OG0010256		Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -22.684 AMFE: -0.658 GC content %: 34.483
Acoerulea_Aqcoe0009s0018.2 Aqcoe0009s0018.2	High	No	776	OG0010256		Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -22.526 AMFE: -0.675 GC content %: 33.376
Acoerulea_Aqcoe0009s0018.3 Aqcoe0009s0018.3	High	No	613	OG0010256		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -22.822 AMFE: -0.654 GC content %: 34.910
Acoerulea_Aqcoe0009s0018.4 Aqcoe0009s0018.4	High	No	467	OG0010256		Get ORF Coding potential... Type: noncoding Potential: -0.625 Folding energies... MFEI: -24.261 AMFE: -0.699 GC content %: 34.690

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).