GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe0014s0008 [ Aqcoe0014s0008]	scaffold_14	83233	84672	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe0014s0008.1 Aqcoe0014s0008.1	High	No	1240	OG0016856		Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -23.944 AMFE: -0.651 GC content %: 36.774
Acoerulea_Aqcoe0014s0008.2 Aqcoe0014s0008.2	High	No	836	OG0016856		Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -24.342 AMFE: -0.644 GC content %: 37.799

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).