GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G213200 [ Aqcoe1G213200]	Chr_01	12785217	12789406	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G213200.1 Aqcoe1G213200.1	High	No	2624	OG0016865		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -24.314 AMFE: -0.634 GC content %: 38.377
Acoerulea_Aqcoe1G213200.2 Aqcoe1G213200.2	High	No	906	OG0016865		Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -25.066 AMFE: -0.643 GC content %: 38.962
Acoerulea_Aqcoe1G213200.3 Aqcoe1G213200.3	High	No	896	OG0016865		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -25.413 AMFE: -0.654 GC content %: 38.839

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).