GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G226000 [ Aqcoe1G226000]	Chr_01	13796104	13797838	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G226000.1 Aqcoe1G226000.1	High	No	994	OG0001604		Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -22.757 AMFE: -0.643 GC content %: 35.412
Acoerulea_Aqcoe1G226000.2 Aqcoe1G226000.2	High	No	1114	OG0001604		Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -22.549 AMFE: -0.634 GC content %: 35.548
Acoerulea_Aqcoe1G226000.3 Aqcoe1G226000.3	High	No	1023	OG0001604		Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -22.717 AMFE: -0.630 GC content %: 36.070

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).