GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G265000 [ Aqcoe1G265000]	Chr_01	17983220	17986224	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G265000.2 Aqcoe1G265000.2	High	No	684	OG0026506		Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -20.526 AMFE: -0.600 GC content %: 34.211
Acoerulea_Aqcoe1G265000.3 Aqcoe1G265000.3	High	No	405	OG0026506		Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -15.136 AMFE: -0.451 GC content %: 33.580

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).