GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G274700 [ Aqcoe1G274700]	Chr_01	19198320	19208767	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G274700.1 Aqcoe1G274700.1	High	No	613	OG0026507		Get ORF Coding potential... Type: noncoding Potential: -1.329 Folding energies... MFEI: -22.480 AMFE: -0.567 GC content %: 39.641
Acoerulea_Aqcoe1G274700.2 Aqcoe1G274700.2	High	No	598	OG0026507		Get ORF Coding potential... Type: noncoding Potential: -1.327 Folding energies... MFEI: -22.676 AMFE: -0.567 GC content %: 39.967

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).