GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G283100 [ Aqcoe1G283100]	Chr_01	20227479	20236415	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G283100.1 Aqcoe1G283100.1	High	No	330	OG0026508		Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -17.818 AMFE: -0.456 GC content %: 39.091
Acoerulea_Aqcoe1G283100.2 Aqcoe1G283100.2	High	No	458	OG0026508		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -18.275 AMFE: -0.498 GC content %: 36.681

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).