GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G314200 [ Aqcoe1G314200]	Chr_01	27320248	27321991	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G314200.1 Aqcoe1G314200.1	High	No	1636	OG0016872		Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -19.847 AMFE: -0.522 GC content %: 38.020
Acoerulea_Aqcoe1G314200.2 Aqcoe1G314200.2	High	No	1531	OG0016872		Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -20.725 AMFE: -0.540 GC content %: 38.406
Acoerulea_Aqcoe1G314200.3 Aqcoe1G314200.3	High	No	1471	OG0016872		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -20.680 AMFE: -0.537 GC content %: 38.545

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).