GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G334900 [ Aqcoe1G334900]	Chr_01	30593656	30594791	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G334900.1 Aqcoe1G334900.1	High	No	720	OG0001604		Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -20.528 AMFE: -0.543 GC content %: 37.778
Acoerulea_Aqcoe1G334900.2 Aqcoe1G334900.2	High	No	522	OG0001604		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -20.651 AMFE: -0.523 GC content %: 39.464
Acoerulea_Aqcoe1G334900.3 Aqcoe1G334900.3	High	No	614	OG0001604		Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -20.765 AMFE: -0.531 GC content %: 39.088

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).