GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe1G443000 [ Aqcoe1G443000]	Chr_01	41181748	41186483	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe1G443000.1 Aqcoe1G443000.1	High	No	1888	OG0026531		Get ORF Coding potential... Type: noncoding Potential: -1.410 Folding energies... MFEI: -23.273 AMFE: -0.621 GC content %: 37.500
Acoerulea_Aqcoe1G443000.2 Aqcoe1G443000.2	High	No	1883	OG0026531		Get ORF Coding potential... Type: noncoding Potential: -1.410 Folding energies... MFEI: -23.165 AMFE: -0.619 GC content %: 37.440

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).