Acoerulea Aqcoe1G448600

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Acoerulea_Aqcoe1G448600
[ Aqcoe1G448600]
Chr_01 41507394 41509506 v3.1 Aquilegia coerulea (Phytozome 13)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Acoerulea_Aqcoe1G448600.1
Aqcoe1G448600.1
Low No 918 OG0084436
Coding potential...
Type: noncoding Potential: -0.296
Folding energies...
MFEI: -22.505 AMFE: -0.622
GC content
%: 36.166


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Acoerulea_Aqcoe1G448600.1  SwissProt 2021-04-01 Q56WL5 5.72e-6


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Acoerulea_Aqcoe1G448600.png