GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe2G145600 [ Aqcoe2G145600]	Chr_02	14180217	14191603	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe2G145600.1 Aqcoe2G145600.1	High	No	905	OG0026549		Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -19.580 AMFE: -0.573 GC content %: 34.144
Acoerulea_Aqcoe2G145600.2 Aqcoe2G145600.2	High	No	740	OG0026549		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -21.014 AMFE: -0.596 GC content %: 35.270
Acoerulea_Aqcoe2G145600.3 Aqcoe2G145600.3	High	No	619	OG0084686		Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -18.401 AMFE: -0.556 GC content %: 33.118

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).