Acoerulea Aqcoe2G177100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G177100 [ Aqcoe2G177100] |
Chr_02 | 21736874 | 21741426 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G177100.1 Aqcoe2G177100.1 |
Low | No | 1137 | OG0010267 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -29.156 AMFE: -0.681 GC content %: 42.832 | |
| Acoerulea_Aqcoe2G177100.2 Aqcoe2G177100.2 |
High | No | 1112 | OG0010267 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -29.254 AMFE: -0.682 GC content %: 42.896 | |
| Acoerulea_Aqcoe2G177100.3 Aqcoe2G177100.3 |
High | No | 952 | OG0010267 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -29.769 AMFE: -0.672 GC content %: 44.328 | |
| Acoerulea_Aqcoe2G177100.4 Aqcoe2G177100.4 |
Low | No | 895 | OG0010267 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -27.330 AMFE: -0.659 GC content %: 41.453 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe2G177100.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
| Acoerulea_Aqcoe2G177100.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
