Acoerulea Aqcoe2G183000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G183000 [ Aqcoe2G183000] |
Chr_02 | 22569887 | 22579843 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G183000.1 Aqcoe2G183000.1 |
Low | No | 1983 | OG0010268 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -24.004 AMFE: -0.653 GC content %: 36.762 | |
| Acoerulea_Aqcoe2G183000.2 Aqcoe2G183000.2 |
Low | No | 1442 | OG0010268 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -25.451 AMFE: -0.648 GC content %: 39.251 | |
| Acoerulea_Aqcoe2G183000.3 Aqcoe2G183000.3 |
High | No | 1129 | OG0010268 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -23.720 AMFE: -0.620 GC content %: 38.264 | |
| Acoerulea_Aqcoe2G183000.4 Aqcoe2G183000.4 |
Low | No | 1914 | OG0010268 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -24.028 AMFE: -0.657 GC content %: 36.573 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe2G183000.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Acoerulea_Aqcoe2G183000.4 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Acoerulea_Aqcoe2G183000.1 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
