Acoerulea Aqcoe2G217900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G217900 [ Aqcoe2G217900] |
Chr_02 | 27299719 | 27301938 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G217900.1 Aqcoe2G217900.1 |
Low | No | 1400 | OG0004866 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -23.750 AMFE: -0.617 GC content %: 38.500 | |
| Acoerulea_Aqcoe2G217900.2 Aqcoe2G217900.2 |
Low | No | 1361 | OG0004866 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -23.652 AMFE: -0.601 GC content %: 39.383 | |
| Acoerulea_Aqcoe2G217900.3 Aqcoe2G217900.3 |
Low | No | 1289 | OG0004866 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -23.957 AMFE: -0.607 GC content %: 39.488 | |
| Acoerulea_Aqcoe2G217900.4 Aqcoe2G217900.4 |
Low | No | 1236 | OG0004866 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -24.320 AMFE: -0.620 GC content %: 39.239 | |
| Acoerulea_Aqcoe2G217900.5 Aqcoe2G217900.5 |
Low | No | 1092 | OG0004866 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -24.084 AMFE: -0.599 GC content %: 40.201 | |
| Acoerulea_Aqcoe2G217900.6 Aqcoe2G217900.6 |
Low | No | 1101 | OG0004866 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -24.387 AMFE: -0.603 GC content %: 40.418 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe2G217900.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Acoerulea_Aqcoe2G217900.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Acoerulea_Aqcoe2G217900.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Acoerulea_Aqcoe2G217900.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Acoerulea_Aqcoe2G217900.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron | |
| Acoerulea_Aqcoe2G217900.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; RC/Helitron |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
