Acoerulea Aqcoe2G413000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G413000 [ Aqcoe2G413000] |
Chr_02 | 41519554 | 41521689 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe2G413000.2 Aqcoe2G413000.2 |
Low | No | 712 | OG0026569 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -26.713 AMFE: -0.667 GC content %: 40.028 | |
| Acoerulea_Aqcoe2G413000.3 Aqcoe2G413000.3 |
Low | No | 793 | OG0026569 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -26.406 AMFE: -0.665 GC content %: 39.723 | |
| Acoerulea_Aqcoe2G413000.4 Aqcoe2G413000.4 |
Low | No | 776 | OG0085004 | Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -24.936 AMFE: -0.641 GC content %: 38.918 | |
| Acoerulea_Aqcoe2G413000.5 Aqcoe2G413000.5 |
Low | No | 614 | OG0085005 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -23.990 AMFE: -0.611 GC content %: 39.251 | |
| Acoerulea_Aqcoe2G413000.6 Aqcoe2G413000.6 |
Low | No | 695 | OG0085006 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -24.000 AMFE: -0.615 GC content %: 38.993 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe2G413000.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Acoerulea_Aqcoe2G413000.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/Gypsy | |
| Acoerulea_Aqcoe2G413000.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Acoerulea_Aqcoe2G413000.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Acoerulea_Aqcoe2G413000.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
