Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Acoerulea_Aqcoe2G427300 [ Aqcoe2G427300] |
Chr_02 | 42475008 | 42479947 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Acoerulea_Aqcoe2G427300.1 Aqcoe2G427300.1 |
High | No | 2377 | OG0016889 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -25.013 AMFE: -0.699 GC content %: 35.759 | |
Acoerulea_Aqcoe2G427300.2 Aqcoe2G427300.2 |
Low | Yes | 1140 | OG0016889 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -28.035 AMFE: -0.754 GC content %: 37.193 | |
Acoerulea_Aqcoe2G427300.3 Aqcoe2G427300.3 |
Low | Yes | 713 | OG0016889 | Get ORF Coding potential... Type: noncoding Potential: -0.608 Folding energies... MFEI: -29.481 AMFE: -0.787 GC content %: 37.447 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Acoerulea_Aqcoe2G427300.2 | Rfam | 14.6 | MIR535 | 4.6e-19 |
Acoerulea_Aqcoe2G427300.3 | Rfam | 14.6 | MIR535 | 2.9e-19 |
Acoerulea_Aqcoe2G427300.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
Acoerulea_Aqcoe2G427300.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac |