Acoerulea Aqcoe3G013200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe3G013200 [ Aqcoe3G013200] |
Chr_03 | 848780 | 853334 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe3G013200.1 Aqcoe3G013200.1 |
High | No | 1788 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -23.154 AMFE: -0.656 GC content %: 35.291 | |
| Acoerulea_Aqcoe3G013200.10 Aqcoe3G013200.10 |
High | No | 1003 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -22.343 AMFE: -0.619 GC content %: 36.092 | |
| Acoerulea_Aqcoe3G013200.11 Aqcoe3G013200.11 |
High | No | 802 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -23.067 AMFE: -0.611 GC content %: 37.781 | |
| Acoerulea_Aqcoe3G013200.12 Aqcoe3G013200.12 |
High | No | 866 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.535 Folding energies... MFEI: -24.896 AMFE: -0.670 GC content %: 37.182 | |
| Acoerulea_Aqcoe3G013200.13 Aqcoe3G013200.13 |
High | No | 998 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.571 Folding energies... MFEI: -23.587 AMFE: -0.641 GC content %: 36.774 | |
| Acoerulea_Aqcoe3G013200.2 Aqcoe3G013200.2 |
High | No | 1333 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -23.586 AMFE: -0.633 GC content %: 37.284 | |
| Acoerulea_Aqcoe3G013200.3 Aqcoe3G013200.3 |
High | No | 1263 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.625 Folding energies... MFEI: -21.330 AMFE: -0.619 GC content %: 34.442 | |
| Acoerulea_Aqcoe3G013200.4 Aqcoe3G013200.4 |
High | No | 808 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.517 Folding energies... MFEI: -22.563 AMFE: -0.606 GC content %: 37.252 | |
| Acoerulea_Aqcoe3G013200.5 Aqcoe3G013200.5 |
High | No | 1407 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -23.269 AMFE: -0.637 GC content %: 36.532 | |
| Acoerulea_Aqcoe3G013200.6 Aqcoe3G013200.6 |
High | No | 679 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.468 Folding energies... MFEI: -24.462 AMFE: -0.620 GC content %: 39.470 | |
| Acoerulea_Aqcoe3G013200.7 Aqcoe3G013200.7 |
High | No | 754 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -25.199 AMFE: -0.655 GC content %: 38.462 | |
| Acoerulea_Aqcoe3G013200.8 Aqcoe3G013200.8 |
High | No | 1167 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.608 Folding energies... MFEI: -23.445 AMFE: -0.655 GC content %: 35.818 | |
| Acoerulea_Aqcoe3G013200.9 Aqcoe3G013200.9 |
High | No | 980 | OG0001179 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -21.296 AMFE: -0.612 GC content %: 34.796 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
