GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G094500 [ Aqcoe3G094500]	Chr_03	6281315	6286033	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G094500.1 Aqcoe3G094500.1	High	No	569	OG0026583		Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -21.705 AMFE: -0.618 GC content %: 35.149
Acoerulea_Aqcoe3G094500.2 Aqcoe3G094500.2	High	No	316	OG0026583		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -18.259 AMFE: -0.520 GC content %: 35.127

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).