GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G095800 [ Aqcoe3G095800]	Chr_03	6394247	6397310	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G095800.1 Aqcoe3G095800.1	High	No	680	OG0026584		Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -23.382 AMFE: -0.631 GC content %: 37.059
Acoerulea_Aqcoe3G095800.2 Aqcoe3G095800.2	High	No	468	OG0026584		Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -22.436 AMFE: -0.587 GC content %: 38.248

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).